CHOMBO - Revision history

GethinWilliams: /* CHOMBO */

2009-06-08T12:15:41Z

CHOMBO

2009-06-08T11:24:26Z

Running the AMRUpwind example from Gethin's build on dartagnan

2009-06-08T11:23:56Z

With MPI and parallel HDF5

2009-06-08T10:16:14Z

With MPI and parallel HDF5

2009-06-08T10:13:07Z

With MPI and parallel HDF5

2009-06-08T10:02:11Z

MPICH v1.2.6

2009-05-08T16:11:06Z

Running the AMRUpwind example from Gethin's build on dartagnan

2009-05-08T16:10:18Z

Running the AMRUpwind example from Gethin's build on dartagnan

2009-05-08T16:09:39Z

Running the AMRUpwind example from Gethin's build on dartagnan

2009-05-08T16:09:14Z

Running the AMRUpwind example from Gethin's build on dartagnan

@@ Line 116: / Line 116: @@
 =CHOMBO=
-The Oct07 release is installed in '''/gsb6/ggdagw/chombo/Chombo-2.0'''.
+<strike>The Oct07 release is installed in '''/opt/chombo/Chombo-2.0'''.</strike>
 ==Without HDF5==
@@ Line 213: / Line 214: @@
 <pre>
-CHOMBO_HOME = ../../../../../opt/chombo/Chombo-2.0/lib
+CHOMBO_HOME = ../../../../../opt/chombo/Chombo-3.0/lib
 </pre>
@@ Line 219: / Line 220: @@
 <pre>
-CHOMBO_HOME = ../../../../../../opt/chombo/Chombo-2.0/lib
+CHOMBO_HOME = ../../../../../../opt/chombo/Chombo-3.0/lib
 </pre>
@@ Line 237: / Line 238: @@
 ==Changes to Makefiles for Fortran90==
-In '''Chombo-2.0/lib/mk/Make.example''':
+In '''Chombo-3.0/lib/mk/Make.example''':
 <pre>
@@ Line 249: / Line 250: @@
 </pre>
-In '''Chombo-2.0/lib/mk/Make.rules''':
+In '''Chombo-3.0/lib/mk/Make.rules''':
 line 104:
@@ Line 267: / Line 268: @@
          @if [ x"$(QUIET)" != x"@" ]; then echo Depending $< ...; fi
 </pre>
 Tested '''example/expHeat/parVersion''' by replacing '''heatfort.F''' with '''heatfort.f90'''.

@@ Line 188: / Line 188: @@
 Tests look to pass OK for both HDF5v1.4.4 and v1.6.7.
-==Running the AMRUpwind example from Gethin's build on dartagnan==
+==Running the AMRUpwind example==
 * Ensure that the appropriate version of '''mpiCC''' is in your path.  For example, you might add:

@@ Line 171: / Line 171: @@
 HDFMPIINCFLAGS= -I/opt/hdf5/hdf5-1.6.7/parallel/include
 HDFMPILIBFLAGS= -L/opt/hdf5/hdf5-1.6.7/parallel/lib -lhdf5 -lz
 </pre>

@@ Line 169: / Line 169: @@
 <pre>
 MPICXX        = /opt/mpich/mpich-1.2.6/ch_shmem/bin/mpiCC
-HDFMPIINCFLAGS= -I/gsb6/ggdagw/hdf5/hdf5-1.6.7/parallel/include
+HDFMPIINCFLAGS= -I/opt/hdf5/hdf5-1.6.7/parallel/include
-HDFMPILIBFLAGS= -L/gsb6/ggdagw/hdf5/hdf5-1.6.7/parallel/lib -lhdf5 -lz
+HDFMPILIBFLAGS= -L/opt/hdf5/hdf5-1.6.7/parallel/lib -lhdf5 -lz
 </pre>

@@ Line 168: / Line 168: @@
 <pre>
-MPICXX        = /gsb6/ggdagw/mpich/mpich-1.2.6/ch_shmem/bin/mpiCC
+MPICXX        = /opt/mpich/mpich-1.2.6/ch_shmem/bin/mpiCC
 HDFMPIINCFLAGS= -I/gsb6/ggdagw/hdf5/hdf5-1.6.7/parallel/include
 HDFMPILIBFLAGS= -L/gsb6/ggdagw/hdf5/hdf5-1.6.7/parallel/lib -lhdf5 -lz

@@ Line 26: / Line 26: @@
 <pre>
-./configure --prefix=/gsb6/ggdagw/mpich/mpich-1.2.6/ch_shmem --with-device=ch_shmem -cc=gcc -c++=g++ \
+CC=gcc FC=ifort F90=ifort CFLAGS="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" \
--fc=ifort -f90=ifort-cflags="-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64" \
+./configure --prefix=/opt/mpich/mpich-1.2.6/ch_shmem --with-device=ch_shmem -c++=g++ >& config.out
 make
 make testing
@@ Line 41: / Line 40: @@
 '''NB C/C++ compiler:'''
-* I needed to copy '''mpicxx''' to '''mpiCC''' in the install directory, for some reason..
+* I needed to link '''mpicxx''' to '''mpiCC''' in the install directory, for some reason..
 ==MPICH2v1.0.8==

@@ Line 191: / Line 191: @@
 </pre>
-to your ~/.bashrc file.
+to your ~/.bashrc file.  (Don't forget to source it, or login again.)
 * cd to where you want to work and copy the code for the examples to your working directory:

@@ Line 205: / Line 205: @@
 </pre>
-* Edit '''./GNUmakefile''' and '''exec/GNUmakefile''', such that they contain the correct paths which point to the installation of CHOMBO under /opt.  In ./GNUmakefile, e.g. (if you have copied the examples to your home dir):
+* Edit two makefiles, such that they contain the correct paths which point to the installation of CHOMBO under /opt.  In '''./GNUmakefile''', e.g. (if you have copied the examples to your home dir):
 <pre>
@@ Line 211: / Line 211: @@
 </pre>
-* In exec/GNUmakefile, e.g.:
+* In '''exec/GNUmakefile''', e.g.:
 <pre>

@@ Line 185: / Line 185: @@
 ==Running the AMRUpwind example from Gethin's build on dartagnan==
-* Ensure that '''/gsb6/ggdagw/mpich/mpich-1.2.6/ch_shmem/bin''' is in your path
+* Ensure that the appropriate version of '''mpiCC''' is in your path.  For example, you might add:
-* copy '''~ggdagw/chombo/Chombo-2.0/example''' to your location of choice
-* cd AMRUpwind
+<pre>
-* edit:
+export PATH=$PATH:/opt/mpich/mpich-1.2.6/ch_shmem/bin
-** '''GNUmakefile''' such that: '''CHOMBO_HOME = ../../chombo/Chombo-2.0/lib'''
+</pre>
-** '''exec/GNUmakefile''' such that: '''CHOMBO_HOME = ../../../chombo/Chombo-2.0/lib'''
 * make clean
 * make example